feature request: add Scopes for 'length' and 'connectivity'

[rec3141]

It would be useful to be able to filter by contig length, or by connections e.g. to avoid plotting singletons, or combined, to avoid plotting short singletons.

[rec3141]

For others looking into this, you can do simple filtering outside of Bandage via perl. These work for FASTG files, but not GFA.

to output sequences >1000 bp/aa from a FASTG file: perl -0076 -ne 'chomp; unless ($.==1) {s/(.*)//; $name=$&; print ">$name$_" if tr/A-Z/A-Z/ > 1000}' assembly_graph.fastg

to print only non-singletons from a FASTG file: perl -0076 -ne 'chomp; unless ($.==1) {print ">$_" if (m/:/);}' assembly_graph.fastg

[rrwick]

That is a good idea - I'll add it to my (ever-growing) future feature list. Thanks!