Ryan Ly

Results 304 issues of Ryan Ly

### What would you like to see added to HDMF? The CatalystNeuro team has added helpful utility functions to the `GenericDataChunkIterator` in NeuroConv: https://github.com/catalystneuro/neuroconv/blob/5bee4c7d69101d1f9cb13d2aa27ae0e7425cc55a/src/neuroconv/tools/hdmf.py#L15 ### What solution would you like?...

category: enhancement

### What happened? The method `AbstractContainer.get_ancestor`: https://github.com/hdmf-dev/hdmf/blob/12864bb253908e3bd48e6610ee8bca4816f85be7/src/hdmf/container.py#L369 is called by `NWBMixin.get_ancestor`: https://github.com/NeurodataWithoutBorders/pynwb/blob/43cfa7b4b31cd2506793faaf8a6297f78bfd47e2/src/pynwb/core.py#L36 which is called by `UnitsMap.electrodes_column`: https://github.com/NeurodataWithoutBorders/pynwb/blob/43cfa7b4b31cd2506793faaf8a6297f78bfd47e2/src/pynwb/io/misc.py#L46 and `Units.addUnit`: https://github.com/NeurodataWithoutBorders/pynwb/blob/43cfa7b4b31cd2506793faaf8a6297f78bfd47e2/src/pynwb/misc.py#L222 to find the ancestor container that has neurodata type...

### What happened? https://github.com/hdmf-dev/hdmf/actions/runs/16409158456/job/46360464748 When running `tox -e wheelinstall --installpkg dist/*.tar.gz`: Started two days ago when the latest version of `tox` was released on pypi. Happens only on: - Windows...

category: bug

### What would you like to see added to HDMF? The data will need to be loaded into memory iteratively and rewritten. HDF5 repack appears to load the dataset into...

category: enhancement

### What happened? HDF5IO is not yet set up to read certain IO settings from Zarr. ### Steps to Reproduce ```python from datetime import datetime from dateutil.tz import tzlocal import...

category: bug

### What happened? See https://github.com/NeurodataWithoutBorders/nwb-schema/issues/630 I believe there are two issues here. 1. `LatentSpaceSeries/data.unit` is identified as an inherited spec and so the spec is not processed when customizing the...

category: bug
priority: medium
topic: extension

This PR just adds new logo source files to the repo for reference. We could not find the original powerpoint / SVG files so @stephprince and I remade them in...

### Describe the issue See https://github.com/NeurodataWithoutBorders/nwb-guide/actions/runs/17189645566/job/48763490338 caused by neuroconv passing `instance=dandi-staging` to `dandi.upload`. See https://github.com/catalystneuro/neuroconv/issues/1484 and https://github.com/dandi/dandi-cli/issues/1692. We'll have to update `neuroconv` to the latest version once a fix is...

enhancement
priority: low

### Describe the issue When testing out the miniscope pipeline, which involves linking .avi files, absolute paths to the video files are stored in the ImageSeries objects in the NWB...

bug

Fix #915 TODO: - Restrict usage to Windows distributions