Ryan Ly
Ryan Ly
With this simple schema `example_dynamic_term_set.yaml`: ```yaml id: https://w3id.org/linkml/examples/nwb_dynamic_enums name: nwb_dynamic_enums prefixes: CL: http://purl.obolibrary.org/obo/CL_ enums: NeuronTypeEnum: reachable_from: source_ontology: obo:cl source_nodes: - CL:0000540 ## neuron include_self: false relationship_types: - rdfs:subClassOf ``` and...
Fix #845. Add a destructor to close the sqlite session and dispose the engine.
This branch tracks commits for the 5.0.0 release of HDMF. Ideally, changes should not be made directly to this PR/branch, but on other PRs that target this branch. When this...
Replaces #1273. Start work on replacing docval with Pydantic (https://github.com/hdmf-dev/hdmf/issues/1129) with the Spec classes, where are at the bottom of the stack and have relatively few interdependencies. Working through this...
### What would you like to see added to HDMF? - @oruebel will look at the backends module - @stephprince will look at the common module - @rly will look...
### What would you like to see added to HDMF? Use release branch https://github.com/hdmf-dev/hdmf/tree/release/5.0.0. - [ ] Remove https://github.com/hdmf-dev/hdmf/blob/12864bb253908e3bd48e6610ee8bca4816f85be7/src/hdmf/monitor.py - [ ] Remove Data.set_data_io's **kwargs option in https://github.com/hdmf-dev/hdmf/blob/12864bb253908e3bd48e6610ee8bca4816f85be7/src/hdmf/container.py#L875 - [...
### What would you like to see added to HDMF? See TODOs in https://github.com/hdmf-dev/hdmf/pull/1312/files Specifically: - Check that RefSpec target type is compatible - use `NamespaceCatalog.is_sub_data_type` - Check that shape...
## Motivation Fix #1311. Requires #1312. Related to #1313 and might be merged with that. ## How to test the behavior? ``` Show how to reproduce the new behavior (can...
## Motivation Fix #429. Related to #1312. ## How to test the behavior? ``` Show how to reproduce the new behavior (can be a bug fix or a new feature)...
### What happened? See https://github.com/nehatk17/ndx-multisubjects/issues/4 ### Steps to Reproduce ```python Create datasetspec that extends VectorData with dtype: datetime ``` ### Traceback ```pytb ../hdmf/src/hdmf/utils.py:578: in func_call return func(args[0], **pargs) ^^^^^^^^^^^^^^^^^^^^^^ ../hdmf/src/hdmf/backends/hdf5/h5tools.py:353:...