Ray Stefancsik

PATO:0001801 decreased water composition

Check how to deal with obsolete phenotype patterns

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How IRIs should resolve after obsoletion? Replaced by? * abnormalAbsenceOfMotilityOfCellularComponentInLocation * abnormallyDecreasedMotilityOfCellularComponentInLocation * abnormallyIncreasedMotilityOfCellularComponentInLocation * abnormalMotilityOfCellularComponent Related issue: https://github.com/obophenotype/xenopus-phenotype-ontology/issues/154

Import calcified anatomical entity with calcification pattern template from HP

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- [ ] Import [`calcifiedAnatomicalEntityWithCalcificationPattern.yaml`](https://github.com/obophenotype/human-phenotype-ontology/blob/master/src/patterns/dosdp-patterns/calcifiedAnatomicalEntityWithCalcificationPattern.yaml) See [Harmonise logical definitions of "Calcified Anatomy" terms #6877](https://github.com/obophenotype/human-phenotype-ontology/issues/6877)

Review related terms: dilated, distended, swollen

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Review and if necessary revise the related terms: * [PATO:0001571 dilated](https://www.ebi.ac.uk/ols/ontologies/pato/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPATO_0001571) * [PATO:0001602 distended](https://www.ebi.ac.uk/ols/ontologies/pato/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPATO_0001602) * [PATO:0001851 swollen](https://www.ebi.ac.uk/ols/ontologies/pato/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPATO_0001851) * Consider removing ['temporal' from the definition.](https://github.com/obophenotype/upheno/pull/892#issuecomment-1285823449) * Discussed on [the UPheno call...

Add 'abnormally scaly anatomical entity' pattern template

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This commit intends to add a new 'abnormally scaly anatomical entity' phenotype pattern template draft for community review. If applied, this commit will fix #894.

This commit intends to add a new 'Abnormally arched anatomical entity' phenotype pattern template draft for community review. If applied, this commit will fix #893.

[PATO:0001594 arched](https://www.ebi.ac.uk/ols/ontologies/pato/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPATO_0001594) 1. [x] add `abnormallyArchedAnatomicalEntity.yaml` DOS-DP pattern draft for community review 2. [ ] get feedback 3. [ ] fix or improve pattern based on feedback * Examples: *...

[PATO:0001804 scaly](https://www.ebi.ac.uk/ols/ontologies/pato/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPATO_0001804) 1. [ ] add `abnormallyScalyAnatomicalEntity.yaml` DOS-DP pattern draft for community review 2. [ ] get feedback 3. [ ] fix or improve pattern based on feedback * Examples:...

Add abnormally dilated cellular component template

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This commit intends to add a new phenotype pattern template draft for community review. If applied, this commit will fix #891.

1. [x] add `abnormallyDilatedCellularComponent.yaml` DOS-DP pattern draft for community review - [PATO:0001571 dilated](https://www.ebi.ac.uk/ols/ontologies/pato/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPATO_0001571) - [GO:0005575 cellular_component](https://www.ebi.ac.uk/ols/ontologies/go/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FGO_0005575) 2. [x] get feedback 3. [ ] fix or improve pattern based on feedback...