socru
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quadram-institute-bioscience
Order and orientation of complete bacterial genomes
Hi, First of all, thanks for writing this piece of software, I wonder it I can use it for detecting genome rearrangements mediated by other sequences such as IS elements?...
**Describe the bug** I have a problem running Socru on Campylobacter jejuni assemblies. The Campylobacter genome can be separated into three fragments separated by ribosomal operons. For Campylobacter coli, the...
**Describe the bug** Hi, I installed socru using Conda v 2.2.4 and got this error when I tried it on an isolate Traceback (most recent call last): File "/Users/a1667917/mambaforge/envs/socru/bin/socru", line...
**Is your feature request related to a problem? Please describe.** This is a great tool. It feels really possible to be able to also export the fragment size between each...
Hello! This is a long shot request but I thought I should give it a try. :) Are there any plans to deprecate the use of Bio.Alphabet? Since biopython 1.78...
These changes add more documentation, comments and more unit tests to Socru. It doesn't change the underlying code. It was all generated by Copilot (AI) so all the usual warnings...
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Order and orientation of complete bacterial genomes