Paul Pavlidis
Paul Pavlidis
The more specific issue here is that we have been adding terms to ChEBI and the maintainers turn that around pretty quickly. Same with TGEMO of course. Adding terms to...
generateNameForSplit gives up too easily :) and interacts badly with the long statement strings. The problem is the split is supposed to have information about the FactorValue that it has,...
The problem is that the DEA result is not being retrieved with the contrast result, which is there. This is accomplished with ExpressionAnalysisResultSetDao.loadWithResultsAndContrasts but I don't see where the problem...
The design information "reappeared". 🤨
Which experiment was causing this?
Please document the nature of the failure - was this a transaction boundary issue?
Just to keep things moving along I ran makeProcessedData on this data set. As to why it filed to happen on import still needs investigation via the logs. But this...
https://github.com/PavlidisLab/Gemma/issues/167 is relevant to this. ExpressionExperimentService.getBatchConfound now checks subsets as well. However, the result is still a String, so some more work is needed to address this issue and give...
The problem is apparently the use of a 'thaw' which detaches the vectors from the experiment, so that when we modify them the ones associated with the experiment are not...
We've confirmed that platform switching now works correctly except for some dataset-specific issues.