Paul Pavlidis
Paul Pavlidis
I came across the `ORDER BY RAND() LIMIT n` syntax in MySQL (and I believe this is supported in hql), which if it's still fast, might be a shade better...
Because it came up again to improve this, I did some more investigation and have some fixes. 1. A reason that sometimes you don't get the expected number of "random"...
It's resolved but apparently it doesn't behave right if there is no data for the data set, I have to look at it. I don't think it's possible to satisfy...
I actually was thinking of simply removing that feature. A link to the browser instead.
This test is a relic as we aren't directly loading ArrayExpress data that way anyway (any longer)
Just outlining the issue here. A non-detected gene is one that is in the RNA-seq pipeline's reference, but for which there are no reads assigned (in some particular range of...
The answer to any questions users would have as they consider using the data. What QC is done for example. How we define outliers. It should be something like a...
You can edit directly, but perhaps make a draft branch before publishing? You just need to switch to the gh-pages branch of Gemma https://github.com/PavlidisLab/Gemma/tree/gh-pages We don't have a great workflow...
Yes this is exactly what I had in mind, as long as we are not listing details that might change (or don't mind having to update it). Could use more...
This is probably good enough for now, not sure what links you mean (https://gemma.msl.ubc.ca/resources/restapidocs/ ?). One small thing: "we're not analyzing from FASTQ" since we're going to do that soon,...