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[minor] diff ex resultset file headers don't account for subsetting when reporting batch confounds

Open ppavlidis opened this issue 5 years ago • 1 comments

"!!! Warning, this dataset has a batch confound with the factors analysed"

Seen in resultset file (but not the analysis.results.txt file) despite the confound not being relevant in the subset analysis.

ppavlidis avatar Nov 05 '20 20:11 ppavlidis

https://github.com/PavlidisLab/Gemma/issues/167 is relevant to this. ExpressionExperimentService.getBatchConfound now checks subsets as well. However, the result is still a String, so some more work is needed to address this issue and give a more precise message in the resultset files.

One solution might be to modify ExpressionExperimentService.getBatchConfound to accept subsets as well.

ppavlidis avatar Jul 19 '21 20:07 ppavlidis