Paul Pavlidis
Paul Pavlidis
It's also a question whether such a large ontology would even be loadable into Protege. We need to be able to use Protege to edit our own ontology. Even with...
Noting that #576 is relevant to this.
I agree that this makes more sense than my proposal in #1105, as long as it's always the correct thing to do.
I fixed that in the experiment so it won't be visible any more
Here's another similar situation https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM604766 This is not really our fault: the submitter listed it as "gender" (do mice have genders?) = "ovarectomized female" Just another example of how data...
has testing been completed for this? Just want confirmation so we can close the issue.
Yes, free text annotations of time point won't have a URI but it would be part of a Statement. `select * from CHARACTERISTIC WHERE VALUE_URI='http://purl.obolibrary.org/obo/OBI_0000025' and VALUE 'reference substance role';`...
The underlying NCBIGeneInfo.GeneType could be used or a new type made if that's better.
That is our internal representation. It's just part of our model for the NCBI gene info. Our practice has been to not carry stuff like that over directly to our...
> Well, actually we could relocate the GeneType enum into our models because we parse it from a string supplied by NCBI. We can do a bit of renaming for...