score-assemblies
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Published
20 hours ago •
pmenzel
pmenzel
Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s)
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score-assemblies issues
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for checking possibly missing plasmids in the assembly https://github.com/andrewjpage/tiptoft needs the original fastq files also I would need one example test dataset in which tiptoft found a missing plasmid
enhancement
Need to think about the output table at the end of the report.