haystack_bio

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Bumps [numpy](https://github.com/numpy/numpy) from 1.15.4 to 1.22.0. Release notes Sourced from numpy's releases. v1.22.0 NumPy 1.22.0 Release Notes NumPy 1.22.0 is a big release featuring the work of 153 contributors spread...

dependabot[bot]

KeyError while running tests

14

Hi, I am trying to install haystack on our server and I am running into an error when running the tests: The tests complete successfully but at the end I...

micdonato

Error generating normalized bigwig files

1

I'm trying to get haystack up and running but get an out of range error generating the bigwig files. This is the output after running `haystack_run_test`. I get a similar...

sjhosui

Number of cell types required

1

How many cell types are required for haystack_bio to provide accurate and reliable results? For example, I have ATAC-seq and RNA-seq data on three cell types? Would this be sufficient...

lucygarner

replicates with haystack_bio

1

How does haystack_bio handle replicates? For example, if each celltype in the example had 3 replicates therefore 3 input BAMs can we still run this?

mistrm82