epa-ng

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add the ability to detect incomplete runs, and recover where the last one left off

pierrebarbera

Although non-standard, many sequence file preprocessing steps add meta-data to the sequence name. For example, in fasta, one often sees >name_1234 or >name;size=1234 in order to note the abundance of...

lczech

Unable to parse model file from IQtree

1

Hello. EPA-NG fails to parse a model file from the latest IQtree version (option --model), when the selected DNA substitution model is not GTR. The attached IQtree model file, where...

stilianoslouca

MacOS M1 neon support

5

Hello Team, It is not supported on aarch64 or (arm64) platform such as macOS M1? Any plan to support it in the future? Thanks, Jianshu

jianshu93

Tree Log-Likelihood -INF Error

4

Hello Team, When I'm trying to place a sequence into the tree on Linux, I got en error `Aborted (core dumped)` without any error information. And I tried the same...

kawabata-tomoko

FastTree

4

Hi, I'm just setting up a pipeline to place query sequences onto a phylogentic tree of ~5,000 reference sequences. I'm finding Raxml to be very slow for tree building and...

atoselan