epa-ng
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FastTree
Hi, I'm just setting up a pipeline to place query sequences onto a phylogentic tree of ~5,000 reference sequences. I'm finding Raxml to be very slow for tree building and wondered whether epa-ng supports the use of FastTree. Will this be a problem when I have to supply the model parameters to epa-ng? I've looked online but haven't found any examples of this.
Cheers, Andrew