phenopacket-schema
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phenopackets
Repository for the GA4GH phenopacket schema
I suggest `1.0` and `2.0`. Relevant place in documentation: https://phenopackets-schema.readthedocs.io/en/v2/metadata.html#phenopacket-schema-version
Protobuf isn't compatible with JSON schema-based projects such as Search/Beacon so they rely on a second-hand Schemablocks representation of some elements. Ideally pehnopackets should be directly discoverable and useable in...
Sent via email, but copying here for visibility: ### Required documentation for GA4GH Steering Committee Approval of Phenopackets v2 All documents can be found in [this folder](https://drive.google.com/drive/folders/1mIDoSwFTI6vtve2KfJy4PrvGly0T4BiS?usp=sharing) (and linked in...
Comment: > Please ensure compatibility and interoperability with ISO-IDMP standards as well as with other already existing terminologies for coding some of the aspects mentioned in the "common schema" to...
The readthedocs is an excellent intro to how to use the java code, what is the status of generated python? Is the java canonical? Sounds like some groups (cc @drseb...
Hi Chris, Are there any plans to update PXF at FAIRsharing? https://fairsharing.org/10.25504/FAIRsharing.9xsgcr For example, the schema is not listed but rather found at https://github.com/phenopackets/phenopacket-schema 2) What databases have implemented the...
Not sure the right term for this, but there was this concept for elements of Phenopackets to have (optionally) references to deeper data that could be useful for more fine...
Bumps [jackson-databind](https://github.com/FasterXML/jackson) from 2.13.3 to 2.13.4.1. Commits See full diff in compare view [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter...
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Bumps [protobuf](https://github.com/protocolbuffers/protobuf) from 3.20.1 to 3.20.2. Release notes Sourced from protobuf's releases. Protocol Buffers v3.20.2 C++ Reduce memory consumption of MessageSet parsing This release addresses a Security Advisory for C++...
Bumps [protobuf-java](https://github.com/protocolbuffers/protobuf) from 3.20.1 to 3.20.3. Release notes Sourced from protobuf-java's releases. Protocol Buffers v3.20.3 Java Refactoring java full runtime to reuse sub-message builders and prepare to migrate parsing logic...