phenopacket-schema
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Compatibility with ISO-IDMP Standards
Comment:
Please ensure compatibility and interoperability with ISO-IDMP standards as well as with other already existing terminologies for coding some of the aspects mentioned in the "common schema" to define the ‘Phenopacket’ on page 6 of the paper.
Page 6 is the Table of Comments in the draft, but I think this commenter is referring to this section. As an ISO Project Lead, I should be able to access the IDMP standards free of charge, if used for the development of the ISO Phenopackets Draft. I will check/confirm.
@lindsmith any progress getting this documentation?
@pnrobinson Yes! I have the information to request watermarked versions, though there are ~6 different standards to choose from and 4 of them have associated implementation guides. As a starting point, I'll request #2 and #3 because they seem to have the highest relevance to the v2 proposed fields, but let me know if others are of interest as well.
- Health informatics — Identification of medicinal products — Data elements and structures for the unique identification and exchange of regulated information on substances
- Health informatics — Identification of medicinal products — Data elements and structures for the unique identification and exchange of regulated information on pharmaceutical dose forms, units of presentation, routes of administration and packaging
- Health informatics — Identification of medicinal products — Data elements and structures for the unique identification and exchange of units of measurement
- Health informatics — Identification of medicinal products — Data elements and structures for the unique identification and exchange of regulated medicinal product information
- Health informatics — Identification of medicinal products — Data elements and structures for unique identification and exchange of regulated pharmaceutical product information
- Health informatics — Identification of medicinal products — Core principles for maintenance of identifiers and terms
@lindsmith Did you manage to get hold of 2 and 3?
@julesjacobsen Yes! Sent via email a while ago, but will resend now. I unfortunately can't post them here (too "public")
The ISO 11239:2012(E) codeTermPair
code
and term
fields are directly comparable to the Phenopacket OntologyClass
id
and label
, but other fields are not present in the OntologyClass
although these are likely present in the ontology itself.