Peter Haverty

Add swagger generation

9

**Describe the solution you'd like** I would love it if Genie.jl auto-generated a swagger documentation page like plumber does for the R ecosystem. (Or does it already, sorry if I...

femtocleaner run status

4

How does one tell if femtocleaner has responded to a request? I've added it to two packages and I'm not sure if I've done it wrong or if I'm waiting...

Added functions (at tests) for looking up best lambda and lambda corr…

1

…esponding to smallest model with cv.meanloss within 1 standard error of the minimum. I used these functions in the show method for a cross validation run.

Update README.md

2

Some users might appreciate a code example for discovering the paths to files in this package. I had to google around a bit to find out.

AbstractIntervalTree

7

Would you be open to having an AbstractIntervalTree? I'd like to experiment with a GenomicRanges type and I'd like to inherit from AbstractIntervalTree.

Type instability when reading a BAM file

3

I don't know if this is a significant bottleneck, but I noticed some type instability when looping over BAM file records: function read_bam(bam_file) # iterate over BAM records chr =...

Export and document some more things?

1

First, thanks for this package! I made some functions for creating objects from my GenomicVectors.jl package using your BAM reader functions. I think I found the right functions. Chromosome names...

default values for Vector{Strand}

1

Could `similar` on an array of `Strand` object be initialized as an array of STRAND_NA?