pgaudet

Queried 2024-02-12 https://docs.google.com/spreadsheets/d/1bd-kQeMFbiwTu48vf1Zpy1tus2vLPkjN9dU1dzxcG2U/edit#gid=0

Review annotations to some intracellular signaling pathways

7

Dear all, The proposal has been made to obsolete GO:0038008 TRAF-mediated signal transduction (https://github.com/geneontology/go-ontology/issues/26498) GO:0019932 second-messenger-mediated signaling (https://github.com/geneontology/go-ontology/issues/26503) GO:0071848 positive regulation of ERK1 and ERK2 cascade via TNFSF11-mediated signaling and...

**Intracellular cassettes** - [ ] cAMP/PKA signal transduction - [ ] calcineurin-mediated signaling - [ ] CAMKK-AMPK signaling cascade - [ ] canonical NF-kappaB signal transduction - [ ] nitric...

Dear all, These two terms seem equivalent: GO:0055056 D-glucose transmembrane transporter activity GO:0005355 glucose transmembrane transporter activity see https://github.com/geneontology/go-ontology/issues/27326 Experimental annotations that need to be reviewed are here: [LINK TO...

Dear all, The proposal has been made to obsolete GO:0052665 tRNA (uracil-2'-O-)-methyltransferase activity see https://github.com/geneontology/go-ontology/issues/26016 Experimental annotations that need to be reviewed are here: [LINK TO ANNOTATION REVIEW GOOGLE SPREADSHEET...

Review annotations to GO:0035553 'oxidative single-stranded RNA demethylation' and GO:0035552 'oxidative single-stranded DNA demethylation'

3

GO:0035553 'oxidative single-stranded RNA demethylation' GO:0035552 'oxidative single-stranded DNA demethylation' see https://github.com/geneontology/go-ontology/issues/26935

Add report in 'direct_annot_to_list_of_terms' and 'reg_ann_to_list_of_terms' to include a group with ECO_0000204

5

We would like to add another report in the GH actions triggered by the labels `direct_ann_to_list_of_terms` and `reg_ann_to_list_of_terms` to also include TAS and NAS? We end up missing Reactome (TAS)...

Review annotations to calcium sequestering

1

This should be a MF GO:0051208 sequestering of calcium ion GO:0061454 release of sequestered calcium ion into cytosol by Golgi GO:1903514 release of sequestered calcium ion into cytosol by endoplasmic...

Review annotations to regulation of skeletal/cardiac muscle contraction by calcium ion signaling

1

GO:0014723 regulation of skeletal muscle contraction by modulation of calcium ion sensitivity of myofibril GO:0014722 regulation of skeletal muscle contraction by calcium ion signaling GO:0014809 regulation of skeletal muscle contraction...

Review annotations to GO:0140035 ubiquitination-like modification-dependent protein binding & children

9

GO:0140035 ubiquitination-like modification-dependent protein binding GO:0140037 sumo-dependent protein binding GO:0140036 ubiquitin-dependent protein binding Annotations are here: https://docs.google.com/spreadsheets/d/18dk19bOMaRqBYBmsAde6_mWQCPxA4Y39RVgwbHlO57Q/edit#gid=0