pgaudet

Review annotations to children of GO:0015291 secondary active transmembrane transporter activity

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- [x] GO:0015541 secondary active cyanate transmembrane transporter activity - [ ] GO:0015355 secondary active monocarboxylate transmembrane transporter activity - [x] GO:0015322 secondary active oligopeptide transmembrane transporter activity - [...

Review annotations to GO:0015291 secondary active transmembrane transporter activity

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Proposed change in label here: https://github.com/geneontology/go-ontology/issues/27495 GO:0015291 secondary active transmembrane transporter activity I want to check whether annotations are consistent with the proposal.

See https://github.com/geneontology/go-ontology/issues/27182 id: GO:0004023 name: alcohol dehydrogenase activity, metal ion-independent namespace: molecular_function def: "Catalysis of the reaction: an alcohol + NAD+ = an aldehyde or ketone + NADH + H+;...

Review annotations to regulation of phosphorylation - 'easy' set

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These each should have fewer than 10 manual annotations. GO:0033671 negative regulation of NAD+ kinase activity GO:1905688 negative regulation of diacylglycerol kinase activity GO:1903300 negative regulation of hexokinase activity GO:1904324...

Annotations to retracted publications

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Dear all, We are adding a new QC check that identifies annotations to retracted publications, and will filter these annotations. For information, annotations are here: https://docs.google.com/spreadsheets/d/1yZX504huEuCyvrzXdqV6zPl8vr-KZ2QVJL2b7k8RHpI/edit#gid=0 Group | number of...

Review annotations to GO:0047760 butyrate-CoA ligase activity

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Dear all, The proposal has been made to obsolete GO:0047760 butyrate-CoA ligase activity and replace it by GO:0031956 medium-chain fatty acid-CoA ligase activity see https://github.com/geneontology/go-ontology/issues/25800

Dear all, The proposal has been made to obsolete GO:0010035 response to inorganic substance GO:0010035 see https://github.com/geneontology/go-ontology/issues/27194

Review PAINT families with 'do not annotate' terms

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List is here: https://docs.google.com/spreadsheets/d/1XWNuM6hlhVBsvogbMw5pfxuDs31Z1AYC4N3HJpxJgIg/edit#gid=0 - 528 families - 242 GO terms

GO:0009991 response to extracellular stimulus GO:0031668 cellular response to extracellular stimulus GO:0032104 regulation of response to extracellular stimulus GO:0032105 negative regulation of response to extracellular stimulus GO:0032106 positive regulation of...

Review annotations to GO:0043491 pkb signaling

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GO:0043491 protein kinase B signaling Annotations + extensions are here: https://docs.google.com/spreadsheets/d/1u9Mo1LQnHVOI88CYNDKhKL2csszugGRLKkZZDicVqWY/edit#gid=653397601