pgaudet

Update gorule_0000063 (with/from data is mandatory for certain evidence)

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Update gorule_0000063: objects of type 'ncRNA' (SO:0001263 and children) using ISM as evidence do not need data in the 'with' field.

Hi @nsuvarnaiari , This file https://github.com/evidenceontology/evidenceontology/blob/master/gaf-eco-mapping.txt contains GO_REFs, in addition to GO evidence-ECO mappings. Since the GO_REF information is out of scope for ECO, we will maintain this locally at...

Obsoletion request: GO:0051603 proteolysis involved in protein catabolic process with replace by

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GO:0051603 | proteolysis involved in protein catabolic process >> replace by [protein catabolic process](http://purl.obolibrary.org/obo/GO_0030163)

Obsolete all 'metabolic process' terms that mention specific amino acids under amino acid metabolic process

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Proposed structure: * amino acid metabolic process ** D/L-amino acid racemization ** L-amino acid metabolic process *** L-amino acid biosynthetic process **** L-proteinogenic amino acid biosynthetic process ***** L-alanine amino...

GO:0018366 chiral amino acid racemization' & children This is a MF.

GOID term GO:0018871 1-aminocyclopropane-1-carboxylate metabolic process GO:0018870 anaerobic 2-aminobenzoate metabolic process GO:0046436 D-alanine metabolic process GO:1902114 D-valine metabolic process GO:0170033 L-amino acid metabolic process GO:0006553 lysine metabolic process GO:0046439 L-cysteine...

These 'x regulation of **metabolic** process' terms need to be obsoleted: GO:0010602 regulation of 1-aminocyclopropane-1-carboxylate metabolic process GO:0090357 regulation of L-tryptophan metabolic process GO:1901494 regulation of cysteine metabolic process GO:0090358...

Obsolete: GO:0015221 lipopolysaccharide transmembrane transporter activity

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Hi @amandamackie Following up on the ticket https://github.com/geneontology/go-annotation/issues/2338 I wonder if lipopolysaccharide transmembrane transporter activity actually exists - ie if LPS transport is always within a membrane (flip/flop)? Thanks, Pascale

Hello, From the go ontolgy jamboree, we propose to obsolete those binding terms that are not physiologically relevant: ~GO:0031249 denatured protein binding -> merge into unfolded protein binding ; GO:0051082;...