pgaudet

[Dear all, The proposal has been made to obsolete - GO:0051709 regulation of killing of cells of another organism and its child: - GO:0051712 positive regulation of killing of cells...

GO:0015462 ABC-type protein transporter activity

See https://github.com/geneontology/go-ontology/issues/25837 GO:0052899 N(1),N(12)-diacetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity GO:0052904 N1-acetylspermidine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity GO:0052903 N1-acetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity GO:0052895 N1-acetylspermine:oxygen oxidoreductase (N1-acetylspermidine-forming) activity GO:0052893 N1-acetylspermine:oxygen oxidoreductase (propane-1,3-diamine-forming) activity GO:0052897 N8-acetylspermidine:oxygen oxidoreductase...

Review annotations to some lipases

1

- GO:0102549 1-18:1-2-16:0-monogalactosyldiacylglycerol lipase activity - GO:0102259 1,2-diacylglycerol acylhydrolase activity - GO:0102258 1,3-diacylglycerol acylhydrolase activity - GO:0033878 hormone-sensitive lipase activity see https://github.com/geneontology/go-ontology/issues/28339

Review annotations to GO:0016401 palmitoyl-CoA oxidase activity and GO:0016402 pristanoyl-CoA oxidase activity

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Dear all, The proposal has been made to obsolete GO:0016401 palmitoyl-CoA oxidase activity (no xrefs)- 4 EXP (rat Acox1, rat Acaa1a, mouse Acadl, human ACAA1) GO:0016402 pristanoyl-CoA oxidase activity (RHEA:40459)...

Checking what is annotated to GO:0044036 cell wall macromolecule metabolic process & children for this ontology ticket https://github.com/geneontology/go-ontology/issues/27960

Dear all, The proposal has been made to obsolete GO:0004028 3-chloroallyl aldehyde dehydrogenase activity ~GO:0008785 alkyl hydroperoxide reductase activity~ see https://github.com/geneontology/go-annotation/issues/5413 GO:0009389 dimethyl sulfoxide reductase activity GO:0034824 citronellyl-CoA dehydrogenase activity...

Taxon constraints should propagate over 'regulates'

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Hi @balhoff Now that we have a new relation to express regulation in another organism, we can propagate taxon constraints over the 'regulates' relation. This doesn't seem to be happening,...

Terms with RHEA in definition xref not in general xref

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GOID | Label & def | RHEA -- | -- | -- GO:0003835 | beta-galactoside alpha-2,6-sialyltransferase activity Catalysis of the reaction: CMP-N-acetylneuraminate + beta-D-galactoside = N-acetyl-alpha-neuraminyl-(2->6)-beta-D-galactosyl derivative + CMP +...

The interspecies interaction working group has decided that the symbiont modulation of host process terms should be formulated as 'symbiont-mediated modulation/perturbation/activation/suppression' (see https://docs.google.com/presentation/d/1035MddHFPgk1n2v1TnOTAqFS6FTymDqk2dw76lsZ48E/edit#slide=id.g29332fe5029_0_81) For reference, definitions are here: https://docs.google.com/presentation/d/1035MddHFPgk1n2v1TnOTAqFS6FTymDqk2dw76lsZ48E/edit#slide=id.g29332fe5029_0_61 The...