pgaudet

Review annotations to children of GO:0016906 sterol 3-beta-glucosyltransferase activity

2

Dear all, The proposal has been made to obsolete GO:0051507 beta-sitosterol UDP-glucosyltransferase activity GO:0051506 ergosterol UDP-glucosyltransferase activity GO:0051508 stigmasterol UDP-glucosyltransferase activity GO:0051509 tomatidine UDP-glucosyltransferase activity since these represent specific substrates...

Dear all, The proposal has been made to obsolete GO:0008997 ribonuclease R activity see https://github.com/geneontology/go-ontology/issues/28072 Experimental annotations that need to be reviewed are here: [LINK TO ANNOTATION REVIEW GOOGLE SPREADSHEET...

Change constraints for ECO:0005543

1

ECO:0005543 biological system reconstruction evidence by experimental evidence from mixed species used in manual assertion has 'with_presence' optional in eco-usage-constraints.yaml. This is wrong, for EXP this should be disallowed. I...

Dear all, The proposal has been made to obsoleteGO:0060520 activation of prostate induction by androgen receptor signaling pathway see https://github.com/geneontology/go-ontology/issues/28041

Review annotations to GO:0032429 regulation of phospholipase A2 activity & children

5

GO:0032429 regulation of phospholipase A2 activity GO:1900138 negative regulation of phospholipase A2 activity GO:0032430 positive regulation of phospholipase A2 activity GO:0032431 activation of phospholipase A2 activity

- [x] FAILS GORULE:0000027 - TEST 6 - Prefix in column 1 ("WormBase") is a synonyms in /db-xrefs.yaml and IS REPAIRED `WormBase WBGene00000002 aat-1 part_of GO:1990184 PMID:14668347 IPI WB:WBGene00000225 C...

Change fail mode back to FAIL for GORULE:0000016 (With/From: IC annotations require a With/From GO ID) after upstream change

1

When ECO removes ECO:0005547 mapping to IC we can change the fail mode back to ERROR. https://github.com/evidenceontology/evidenceontology/issues/262#

Review annotations to GO:0071921 cohesin loading & GO:0061774 cohesin unloading

2

GO:0061774 cohesin unloading > 0 annotations GO:0061781 mitotic cohesin unloading > 0 annotations GO:1905411 positive regulation of mitotic cohesin unloading > 0 annotations GO:1905410 regulation of mitotic cohesin unloading >...

Dear all, The proposal has been made to obsolete GO:0045129 NAD-independent histone deacetylase activity Annotations are here: 1 Complex Portal 5 FlyBase 1 SGD Will be replaced by GO:0004407 histone...

IGNORE - checking obsoletion candidates set

1

GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity GO:0000413 protein peptidyl-prolyl isomerization GO:0001932 regulation of protein phosphorylation GO:0001933 negative regulation of protein phosphorylation GO:0001934 positive regulation of protein phosphorylation GO:0001977...