pgaudet

Results 300 issues of pgaudet

_From @pgaudet on November 23, 2017 12:23_ Hello, Following up on #13004, we need to implement a rule to prevent propagation of GO:0001618 virus receptor activity annotations. It may make...

annotation rule

Action item from Oct 2017 GOC meeting. I assigned @cmungall - please assign someone else if appropriate.

annotation rule

Matrix: Add more explanation text to the matrix rule check data html page so curators know what they’re actually looking at on this page. @ValWood Can you provide some text...

annotation rule
action item from 2018-10 Montreal GOC mtg

These are not in our reports (http://release.geneontology.org/2019-06-09/reports/gorule-report.html) Looks like the data is going in AmiGO and in all our products without checks ?

bug (B: affects usability)
annotation rule

Taxon=0 has been observed: https://github.com/geneontology/pipeline/issues/239#issuecomment-1701406534 This should not be allowed; ideally the allowed taxa should come from the taxa loaded (if this is doable)

bug (A: showstopper)
annotation rule

Hello, Right now we have 4 files for several species (human chicken cow pig dog), which was requested here #156 (with little explanation as to why we anted that). 1....

enhancement

Once this ticket is done: https://github.com/geneontology/go-site/issues/968 We'll need to review all GO rules to check that the status is OK (approved, implemented, obsolete) and that the GAF examples are removed.

annotation rule

We want to do this to allow using MEROPs (and perhaps other resources) as evidence for IKR annotations. Specific example from @sjm41 > In that example: Entity: A1ZBU9 (CG13423/FBgn0034513) Qualifier:...

plasmodb syntax ID has a typo in db-xrefs.yaml and db-xrefs.json "id_syntax": "PF3D7_[0-9]{7})", should be "id_syntax": "PF3D7_[0-9]{7}", reported by @alexsign