pgaudet

Some genes are missing PTHR family info

17

Hello, Looks like this one is not yet resolved but I cannot find any open ticket. See for example: http://amigo.geneontology.org/amigo/gene_product/UniProtKB:T1ESS4 This gene has IBA annotations, technically it should belong to...

Incorrect parentage shown in AmiGO

5

Hello, GO:0034061 DNA polymerase activity and GO:0003964 RNA-directed DNA polymerase activity look like direct children of 'catalytic activity' in AmiGO, but they are not. Why the discrepancy ?  ...

Gramene appears to have duplicated entries

13

 I m not sure at which step the merge of these two entries is not done. Thanks, Pascale

Implement QC/QA checks in the Noctua graph editor and in the form

1

For example - see this file (but we need to make it clearer what the rules do exactly): https://docs.google.com/spreadsheets/d/1UggYmvWfE5SY9ijDbHetTNKfJcV6V3BvQuBguZG3q5s/edit#gid=0 @tmushayahama

GO:0047822 hypotaurine dehydrogenase activity maps to a RHEA term that will be obsoleted

9

email from @kaxelsen > A recent paper (pmid: 32156684) has shown that this activity is catalyzed by FMO1 (Q01740; FMO1_HUMAN) that is classified as EC 1.14.13.8. The corresponding reaction covering...

GO:1900274 regulation of phospholipase C activity - GO:1900275 negative regulation of phospholipase C activity - GO:0010863 positive regulation of phospholipase C activity - GO:0007202 activation of phospholipase C activity These...

Dead definition cross references - Drosophila terms

1

Hi @hattrill Can you provide PMIDs (or other sources) for the following fly terms? These links are dead. - [ ] GO:0045498 | sex comb development | The process whose...

Cross reference guidelines

4

Hello, Working on the [definition](https://wiki.geneontology.org/Guidelines_for_GO_textual_definitions#Definitions_cross-references) and [general](https://wiki.geneontology.org/Guidelines_for_database_cross_references) cross reference guidelines, I wonder if the following sourcs should be allowed as def/general cross references: - Reactome (maintained outside GO): for eg...

Hello, We have ~ 200 terms with definitions cross-references to websites, most of which don't resolve to anything anymore. Full list is here: https://docs.google.com/spreadsheets/d/1tnHOfPV-s_m6Gbx7JdByYLgwj5vzpX6FccXkTEjNels/edit#gid=1330506078 A shorter list we can start...

GO:0015545 bicyclomycin transmembrane transporter activity >> xenobiotic transport; no annotation