pgaudet

What is the action here?

Notes are here https://wiki.geneontology.org/Ontology_meeting_2025-02-24#Changing_xrefs_from_ENZYME_to_EXPLORENZ

@cmungall The DP for CC assembly is: https://github.com/geneontology/go-ontology/blob/master/src/design_patterns/cc_assembly.yaml Which seems to apply to complexes, at least how it's described: > "The aggregation, arrangement and bonding together of a set of...

What would the parent be? The two possible top-level classes we have are 'cellular component assembly' 'protein-containing complex assembly' should we create somce kind of molecular complex assembly' parent? Thanks,...

@kimrutherford I think you are right.

@rozaru Just to make sure I understand: Are you suggesting that the new term 'GDP-mannose biosynthetic process' is_a mannose catabolic process? ie you'd consider mannose to mannose-6-phosphate a mannose catabolic...

+[Term] +id: GO:0141199 +name: GDP-mannose biosynthetic process from glucose +namespace: biological_process +def: "The chemical reactions and pathways resulting in the formation of GDP-mannose from glucose." [PMID:21273394, PMID:9287314] +xref: MetaCyc:PWY-5659 +intersection_of:...

Note that I have removed the activities from the LD of the siblings 'GDP-mannose biosynthetic process from fructose-6-phosphate' and 'GDP-mannose biosynthetic process from mannose', since these were not strictly necessary...

Thanks @rozaru ! I fixed this, and for the parent & siblings.

Dear all, The proposal has been made to obsolete GO:0141199 GDP-mannose biosynthetic process from glucose & replace it by GO:0061729 GDP-mannose biosynthetic process from fructose-6-phosphate. The reason for obsoletion is...