pgaudet

Results 1559 comments of pgaudet

Review annotations to children and regulation terms of (subtype) chitin metabolic process

Right, adding an annotation to the proper BP would be very useful @rozaru @srengel @Antonialock

Produce acceptable taxon pair list for IntAct (remove i.e. IntAct IPI annotation to P03772)

Hi @bmeldal I dont think this is correct according to the GO guidelines. You can say that bacteriophage lambda phosphatase has a phosphatase activity based on this assay;however what you...

Produce acceptable taxon pair list for IntAct (remove i.e. IntAct IPI annotation to P03772)

Right - you could probably get a combination of phage/viral species + host species and sort most of them out this way, is this what you mean ? Thanks, Pascale

Produce acceptable taxon pair list for IntAct (remove i.e. IntAct IPI annotation to P03772)

Hi @bmeldal The clean solution would be to tparse the host information in the UniProt entry - for example for http://www.uniprot.org/uniprot/P27958#names_and_taxonomy they have this: ![image](https://user-images.githubusercontent.com/4782928/33997911-419d4cba-e0e6-11e7-8723-f43aefa94318.png) Can this be done ?...

Produce acceptable taxon pair list for IntAct (remove i.e. IntAct IPI annotation to P03772)

Hi @sandraorchard @pporrasebi The problem with the higher level mapping that Sandra suggests is that for example HIV proteins *could* interact with mouse proteins in vitro, but never in vivo...

Produce acceptable taxon pair list for IntAct (remove i.e. IntAct IPI annotation to P03772)

Hi @sandraorchard @bmeldal @pporrasebi Any further thoughts on this ?

Produce acceptable taxon pair list for IntAct (remove i.e. IntAct IPI annotation to P03772)

Sounds good. I'll keep this open. Thanks ! Pascale

Produce acceptable taxon pair list for IntAct (remove i.e. IntAct IPI annotation to P03772)

Sure ! I've added this to next week's agenda.

Annotation review for obsoletion GO:0035304 regulation of protein dephosphorylation, and its descendants

Terms have been obsoleted. Remaining annotations by GeneDB will appear in reports.

Review annotations to cysteine-type endopeptidase activity involved in X

Hi @raymond91125 - I thought we were keeping GO:0097153 cysteine-type endopeptidase activity involved in apoptotic process - and perhaps renming it back to 'caspase activity'. This is not super consistent...