pgaudet

Results 1565 comments of pgaudet

Add report in 'direct_annot_to_list_of_terms' and 'reg_ann_to_list_of_terms' to include a group with ECO_0000204

@cmungall

Add report in 'direct_annot_to_list_of_terms' and 'reg_ann_to_list_of_terms' to include a group with ECO_0000204

Please include this in the 'normal' EXP report if possible, or generate another report 'GOIDs__author-statement'

Add report in 'direct_annot_to_list_of_terms' and 'reg_ann_to_list_of_terms' to include a group with ECO_0000204

This seems to be working correctly. Thanks @kltm !

Review annotations to regulation of phosphorylation - 'easy' set

Annotations are here: https://docs.google.com/spreadsheets/d/1KNNZ5oLsk-Dgy_dwBRCp9h4ojbbzmmP9mnGSDFkOiPU/edit#gid=0 AgBase 1 ARUK-UCL 17 BHF-UCL 7 CACAO 4 CAFA 4 MGI 14 ParkinsonsUK-UCL 2 UniProt 19 ZFIN 1 1 interPro mapping InterPro:IPR005397

Review annotations to [aromatic compound metabolic process/ cellular/nitrogen compound metabolic process]/ heterocycle metabolic process

@RLovering Is this nitric oxide signaling ?

Review annotations to GO:0035553 'oxidative single-stranded RNA demethylation' and GO:0035552 'oxidative single-stranded DNA demethylation'

@RLovering Hello ! @colinlog and I have reviewed all annotations for these 2 terms. In fact they are redundant with MF, in all cases https://docs.google.com/spreadsheets/d/1tNAH3cxIwN9uoOgSE-AiaY7eZsiqFDDkWC6JICMV3kc/edit#gid=0 So, these annotations can be...

Review annotations to GO:0035553 'oxidative single-stranded RNA demethylation' and GO:0035552 'oxidative single-stranded DNA demethylation'

GO:0035553 is also obsoleted - are the suggestions we made not working ?

Review PAINT families with 'do not annotate' terms

For reference, the families are: Unique PTHR families -- PTHR24103 PTHR10131 PTHR12419 PTHR15730 PTHR10454 PTHR11256 PTHR13367 PTHR14499 PTHR10502 PTHR10516 PTHR11129 PTHR11471 PTHR11774 PTHR12753 PTHR13869 PTHR14614 PTHR15228 PTHR16566 PTHR22635 PTHR23055 PTHR24248...

Review annotations to GO:0047844 deoxycytidine deaminase activity

@raymond91125 please confirm that the term has been replaced by GO:0004126 cytidine deaminase activity. For most groups that would mean that no re-annotation is needed. Thanks, Pascale

Review annotations to GO:0047844 deoxycytidine deaminase activity

The term was obsoleted. Remaining annotations will appear in error reports.