pgaudet

@dustine32 Do you check obsolete terms (with their replace by) when you load SynGO data ?

assigned_by | number of annotations -- | -- AgBase | 27 ARUK-UCL | 5 BHF-UCL | 36 CACAO | 9 HGNC-UCL | 1 MGI | 34 RGD | 13 UniProt...

@deustp01 I did not get this mapping when I ran the query: https://github.com/geneontology/go-annotation/blob/master/reports/4961/EMPTY_mappings_GO_0010737.tsv The likely explanation is that this mapping is not in theReactome2GO mapping file: http://release.geneontology.org/2024-01-17/ontology/external2go/reactome2go Do you know...

Hi @pfey03 I will create the new cAMP-PKA signaling term, plus regulation, and once that done, people can review their annotations. Thanks, Pascale

Replaced by https://github.com/geneontology/go-annotation/issues/5637

Hi Peter, As far as I can tell, you only use GO:0099635, see https://github.com/geneontology/go-annotation/blob/master/reports/4955/mappings_GO_0098695-GO_0098697-GO_0098872-GO_0099102-GO_0099507-GO_0099508-GO_0099520-GO_0099521-GO_0099529_etc.tsv However Reactome have a number of TAS annotations, are we generally missing those? Generally, if you...

Annotations are here: https://docs.google.com/spreadsheets/d/1nTTBb0k2qZsPf3V0fFPvKMvRqBJwuvpFkDE2x7FWp1Y/edit#gid=0 8 BHF (plus 5 others added to spreadsheet) plus 3 neg reg annotations - all done 1 Complex Portal 1 UniProt

This looks good to me. @hattrill ?

@raymond91125 Can you please create that new term?

Annotations are here: https://docs.google.com/spreadsheets/d/1lJsMZxozw_-lqDs0qq8TU6NJIaXloxa_cpLSaujNTTQ/edit?gid=0#gid=0 Group | Number of annotations -- | -- MGI | 5 RGD | 8 UniProt | 9 DONE Suggestions have been made for reannotation.