Species names in amptk_mock2.fa and amptk_mock3.fa vs Figure 4

[peterjc]

Cross reference #87, amptk_mock1.fa was earlier work and does not have species names.

Pulling out the species names,

$ grep "^>" amptk_mock[2-3].fa | cut -f 2 -d ">" | cut -c 5- | sort -n | uniq
1 |FP170182|Phialocephala fusca
2 |RF10JR|unknown Ascomycete
3 |FP170134|Phialocephala lagerbergii
4 |FP170235|unknown Ascomycete
5 |RF1JR|Aspergillus candidus
6 |RF3JR|Bjerkandara adusta
7 |GDL-1|Laetiporus caribensis
8 |RF5JR|Trametes gibbosa
9 |OR2|Laetiporus gilbertsonii
10 |MR5-1|Gloeoprus pannocinctus
11 |FP72612|Wolfiporia dilatohypha
12 |FP170198|Schizopora sp
13 |FP170231|Fomitopsis ochracea
14 |L34-2|Laetiporus cremeiporus
15 |RF9JR|Phanerochaete laevis
16 |DA37|Laetiporus cincinnatus
17 |RF7JR|Puntularia strigooszonata
18 |IN4-1|Phellinus cinereus
19 |MR5-3|Antrodiellla semisupina
20 |TJV93-174|Leptoporus mollis
21 |RLG7163|Leptoporus mollis
22 |FP170186|Mortierelllales sp
23 |HHB9564|Laetiporus percisinus
24 |FP170215|Penicillium nothofagi
25 |FP170177|Pochonia suchlasporia
26 |MD275|Wolfiporia cocos

Now comparing these to Figure 4 https://doi.org/10.7717/peerj.4925/fig-4 by eye (since sadly the figure is an image), most agree:

1. Phialocephala fusca
2. unknown Ascomycete --> Ascomycete sp.
3. Phialocephala lagerbergii
4. unknown Ascomycete --> Helotiales sp.
5. Aspergillus candidus
6. Bjerkandera adusta (cross reference #86)
7. Laetiporus caribensis
8. Trametes gibbosa
9. Laetiporus gilbertsonii
10. Gloeoprus pannocinctus
11. Wolfiporia dilatohypha
12. Schizopora sp
13. Fomitopsis ochracea
14. Laetiporus cremeiporus
15. Phanerochaete laevis
16. Laetiporus cincinnatus
17. Puntularia strigooszonata
18. Phellinus cinereus
19. Antrodiellla semisupina
20. Leptoporus mollis
21. Leptoporus mollis
22. Mortierelllales sp
23. Laetiporus percisinus
24. Penicillium nothofagi
25. Pochonia suchlasporia -> Metapochonia suchlasporia (homotypic synonym)
26. Wolfiporia cocos

Note the paper mock2 and mock4 have changed from "unknown Ascomycete" to "Ascomycete sp." and "Helotiales sp." respectively. Also, mock25 was updated from the homotypic synonym to "Metapochonia suchlasporia".

None of these three are discussed by name in the paper, so this does not seem very important, but still might be nice to update the FASTA files here to match the paper.