Panos Bravakos

AfterQC total bases calculation

1

AfterQC is constantly counting wrong the total bases in paired end Miseq fastq reads. For example two paired end files with total bases 611,060,153 (as calculated by various programs) it...

Partitioned data with starting tree

8

### What is the issue that you are having? I am running MrBayes in batch mode with partitioned data and a starting tree which are read correctly, but it gets...

When i try to open a file in Ubuntu 18.04, the program immediately terminates and i get the following error: ``` INFO ] [Logger ] Record log in /home/panos/.kivy/logs/kivy_19-02-28_10.txt [INFO...

Error when running MetaCompass

4

Hi, I am running the following command: ``` python3 go_metacompass2.py -1 /home1/pbravakos/Software/MetaCompass/tutorial/thao2000.1.fq -2 /home1/pbravakos/Software/MetaCompass/tutorial/thao2000.2.fq --memory 223 --threads 19 --verbose --mincov 500 -o example2_output ``` And I get the following error:...

Fastq quality output

3

Hi, I am running Prinseq-plus-plus on paired end fastq files and the ouput seems to be probematic. In at least one read (haven't checked all the reads) the lengths of...