Oliver Schwengers

Hi @splaisan , thanks for reaching out and asking. Indeed, it would be very nice if Bakta were able to instantly use circularity information from Flye. Actually, this is already...

Sure. This is a recent example from a Unicycler assembly: `>1 length=4635742 depth=1.00x circular=true` In this case, Bakta is able to extract this information and mark this sequence as _complete_...

Hi, I'm facing the same issue, so this might be related to #188 ? Unfortunately, I have no idea how to solve this. Might be a bug?

That's exactly what I'm also facing. This unpredictable behavior is rather odd and therefore should be addressed as it might leave some people quite puzzled. Additionally, if Unicycler would allow...

Another idea (inspired by @tseemann) is to use a ranked set of broader protein clusters. This could be addressed by skipping the `IPS` and `PSC` from the normal database and...

Hi @GaioTransposon, fyi: you might be interested in [v1.7.0](https://github.com/oschwengers/bakta/releases/tag/v1.7.0) which introduces a `light` database version as described in https://github.com/oschwengers/bakta/pull/196 This lightweight version is only 1.2 Gb zipped and 3 Gb...

Yes, the 3rd party dependencies needed an update. It should work, now.

Thanks for the idea. We will consider this for the next Platon db update.

Hi @mtruglio, thanks a lot for reporting. We'll have a look at it and come back asap once we have figured out what exactly is causing this error.

Hi @3between7, excellent question! We just thought it might take too much space in the figures, so we skipped them. As we're currently thinking of rewriting the plotting code and...