Oliver Schwengers

Hi @kitka2000 , did a fresh Conda environment help to solve this issue?

You're very welcome - glad to hear! All the best, Oliver

Hi Magda, since Bakta requires `1.6.2` of `alive-progress`, you cannot update it to `2.4.1` w/o breaking Bakta's dependencies. Therefore, you should either keep `1.6.2` or install Bakta in a new...

Hi, this would be a great enhancement I'd highly appreciate this feature!

Hi @Liqueurdefehling , Though this might sound confusing in first place, it is actually the expected behavior. Platon was designed to classify draft contigs and thus extract plasmid-borne contigs. In...

Hi @Gian77 , the `--characterize` option simply conducts all characterization tasks without filtering for or predicting any plasmid/chromosome inference. It's just a convenience option to characterize *all* contigs. If you'd...

Hi @Gian77 , wel, it depends. Sure, a small contig can have a BLAST+ hit against a reference plasmid. But this might also be a small part of a mobile...

Well, not exactly. The characterization is correct in terms of the descriptions. This step does *not* classify by any means, it merely provides all information on all contigs. For an...

Hi @pbelmann , thanks for reaching out. The `--meta` flag was introduced in https://github.com/oschwengers/platon/commit/78747e89c80daaad54391ff457fad748aa9acd96 after the release of [v1.6](https://github.com/oschwengers/platon/releases/tag/v1.6). Therefore it is not yet available in the container. I'll compile...

Hi @barbaracania, thanks for reaching out. There are couple of things going on here, so I'll try to address them in chronological order: 1. For some reason, the first 4...