Oliver Schwengers

Results 60 comments of Oliver Schwengers

Hi and thanks for the great library! I'm quite late to this, but could it also be possible to manually define a dimension for `1/s` as for instance `kb` which...

Hi @bbuchfink , thanks for your very interesting comment on your plans! May I add another scenario that I'd be very much interested in and which, for sure, will also...

@bbuchfink , FYI: to keep things better traceable and manageable, I opened a distinct issue to address potential speedups for these high identity use cases -> #419 Thanks a lot...

Thanks for the quick response. I'm glad this might actually work and could be done! Sorry if I wasn't clear enough on our use cases. With "tons of Diamond runs"...

Wonderful - I'm very much looking forward to this! Although the highly fragmented nature of BLAST DBs is not ideal for the management (distribution, file checks, etc) for our setup,...

Hello @bbuchfink, just out of curiosity: How is the parallel loading of db chunks going? We're very much looking forward to this Best regards

Thanks for all the effort you put into this and taking this on. It's very much appreciated!

Hi @rsiani , thanks for the kind feedback! I'm not quite sure if understand you right. If you say that you'd like to cluster genes based on functional categories then...

Thanks for the explanation, now I understand ... I totally agree that integrating the plethora of information from different databases is truly a tough task with huge potential to get...

Sounds great - thanks! I'd suggest to collect the representative member of a UniRef90 cluster from UniProtKB/TrEMBL, for example: https://www.uniprot.org/uniref/UniRef90_K0I7X2 -> https://www.uniprot.org/uniprot/K0I7X2