memote
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opencobra
memote – the genome-scale metabolic model test suite
Hello, I am trying to generate a memote report over a local git commit of a model and ran across this issue when trying to run memote report history --location...
#### Problem description I can't run run memote from command line. Always getting the same error. #### Code Sample memote report snampshot iCTH669_for_MFA.sbml ### Context Trying to run memote via...
https://memote.io/ now gives a 404 error. Therefore I don't know where to view MEMOTE documentation (aside from github). Does this mean that MEMOTE is command line only now? Thanks, Wheaton
* [x] Does not fix an open issue This fix is related to issue #315, but it is a band-aid solution for the current state of database IDs, not an...
After installing memote 0.14.0 and required packages, I get the error message: ImportError: cannot import name 'get_pkg_info' from 'depinfo' and then the specific path to results.py. When looking in the...
MEMOTE has recently been throwing errors when trying to run it. This is odd as I haven't updated MEMOTE from my end in quite a while (I'm using version 0.13.0)....
The current implementation of stoichiometric consistency https://github.com/opencobra/memote/blob/master/src/memote/support/consistency.py#L66 provides a substantial under-estimate of the stoichiometric consistency when the heuristic check for internal reactions https://github.com/opencobra/memote/blob/master/src/memote/support/consistency.py#L93 misses some reactions that are actually external...
Even though a memote docker image is tagged with version 0.13.0, it still contains a memote version 0.12.0: ``` docker run -it --entrypoint="/bin/bash" opencobra/memote:0.13.0 memote@ca4dfe75197d:~$ memote --version memote, version 0.12.0...
### Checklist - [+] I searched the [documentation](https://memote.readthedocs.io). - [+] I looked through [similar issues on GitHub](https://github.com/opencobra/memote/issues). - [-] I looked up "How to do ... in memote" on a...
#### Problem description Please explain: * I tried to upload a genome scale metabolic model in its sbml form to http://memote.io/, *However an error occured and i couldn't upload the...