memote
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opencobra
memote – the genome-scale metabolic model test suite
### Checklist - [x] There are [no similar issues or pull requests](https://github.com/opencobra/memote/issues) for this yet. ### Is your feature related to a problem? Please describe it. I want to be...
The calculations displayed are incorrect, and this seems to affect the final score as well. 
### Checklist - [x] I searched the [documentation](https://memote.readthedocs.io). - [x] I looked through [similar issues on GitHub](https://github.com/opencobra/memote/issues). - [x] I looked up "How to do ... in memote" on a...
Hello, How could use the memote diff function but in python with "json" format models? Regards
I want to test a model against essentiality data. I have data for nearly all genes in this organism, many of which are not included in the model. I expected...
Hi, I am trying to incorporate automatic memote tests in a metabolic model I am building. I was trying out your instructions in the documents, but I ran into an...
Hello, I run: ``` memote report snapshot --filename "report.html" iEK1008.xml ``` I get this: ``` /home/agustin/.local/lib/python3.6/site-packages/optlang/glpk_interface.py:688: KeyboardInterrupt (to show a full traceback on KeyboardInterrupt use --full-trace) ================================ 55 failed, 43...
Hi, Is possible to use a ".json" format model with memote? I run: ``` memote report snapshot --filename "report.html" iEK1011_m7H10_media.json ``` I get this: ``` critical: The model could not...
#### Problem description > Some biomass precursors are taken from the media and directly consumed by the biomass reaction. It might not be a problem for some ions or metabolites...
