memote
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opencobra
memote – the genome-scale metabolic model test suite
When installing memote pandas is downgraded. Please make sure memote works with latest pandas version, i.e. change: ``` pandas >=0.20.1,=0.20.1 ```
Hi, I have run memote report snapshot for my model. For some reason, in Network Topology, test Universally Blocked Reactions, the number is different when I run with cobrapy manually:...
The following list of tests sometimes contains `None` or `nan` values in the `"data"` key. This points to exceptions occurring in the code that we are not properly handling (or...
We want to come up with a reasonable weighting of the categories and of individual tests within the categories. We're already very sure that we can make a larger distinction...
#### Problem description The current reports are very large (~3.7MB) mainly due to all the embedded javascript. This will create a lot of issues in the future. Basically every code...
#### Problem description When creating the memote report on the attached model I get an error in `Non-Growth Associated Maintenance Reaction` [tiny_example.zip](https://github.com/opencobra/memote/files/3059789/tiny_example.zip) #### Code Sample ```bash memote report snapshot --filename...
#### Problem description `compartments` are an important part of constraint-based models. Correct annotation and description of compartments is important to evaluate the quality of the model and understand the model...
#### Problem description - [ ] The result of `test_gene_protein_reaction_rule_presence` is normalized by the total amount of reactions which includes pseudo and boundary reactions. - [ ] The result of...