cobrapy

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Metadata fbc3

26

Updated version of https://github.com/opencobra/cobrapy/pull/988. Tried to simplify and tidy the code in addition to merging. Modified according to @cdiener requests - Ignored changes in notes for now - renamed constructors...

akaviaLab

Fix 673

2

* [X] fix #673 * [X] description of feature/fix Fix #673 by making reactions in species search the model fields, if this species is in a model. Added checks in...

akaviaLab

type hint changes in dictlist.py

3

* [ ] fix #(issue number) * [X] description of feature/fix Changed type hints in dictlist to be TypeVar(Object), because otherwise my linter would complain about expecting a Reaction and...

akaviaLab

`loopless_solution` does not respect objective

5

#### Problem description Hi all, I am running loopless FBA and I noticed that when I run several times the optimisation I get different results. This does not occur systematically...

cfrioux

cplex or gurobi to solve the model

7

#### Problem description Please explain: Hello! Please I'm trying to solve a model using cplex or gurobi as a solver for pFBA but it doesn't work ? Do you have...

Ilhem36

FastCC results differ from respective MATLAB function

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Hello, I would like to raise a question regarding the FastCC implementation of Cobrapy. After multiple runs, FastCC outputs a different number of blocked reactions using the Recon1 model. It...

NantiaL

can not charge model in Memote

3

Hi, i am trying charge a model in Memote, but, say the error: (base) C:\Users\user>memote report snapshot C:\Users\user\Documents\MATLAB\BORRADOR_RH16\raeu_2909v6.xml critical: The model could not be loaded due to the following SBML...

mascencio27

Behavior of Gene.functional and Reaction.functional is unclear

3

#### Problem description Setting `Gene.functional` does currently not trigger side effects. This leads to reactions with `rxn.functional == False` that still carry flux. The use case for that should be...

cdiener

can't find the additional constraints after saving the model in .mat format or .json format

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Please explain: I'm trying to add coupling constraints in a model and save the modifications in a new model with cobra.save matlab or json  the coupling are inserted successfully...

Ilhem36

Acess to coupling constraints in Harvey Model

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#### Problem description Please explain: #### Problem description Hello I'm trying to access to the coupling constraints of the whole body metabolism with cobrapy but I m getting this error...

Ilhem36