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Updating ELK 0.43 to 0.5

1

Resolves #380 #660 - [ ] `docs/` have been added/updated - [ ] tests have been added/updated - [ ] `mvn verify` says all tests pass - [ ] `mvn...

matentzn

Add option to for ANSI colors in robot output for better github actions experience

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This idea came from @krchristie Ontology editors would find it easier if errors and warnings were appropriately color highlighted in GitHub actions GitHub supports use of ANSI color output on...

cmungall

Hidden integration test problems and platform differences

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A pair of integration tests in `remove.md` and `filter.md` are both writing to `output/remove_class.owl`. The `remove` output matches the desired result in `docs/examples/remove_class.owl`, but the `filter` output does not match....

jamesaoverton

Test ROBOT with GraalVM

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[GraalVM](https://www.graalvm.org/) includes a tool called [`native-image`](https://www.graalvm.org/reference-manual/native-image/) that can convert a Java JAR file to a platform-native binary that can be executed without needing a JVM installed. This could simplify the...

jamesaoverton

Integration of Robot in other tools (through maven jars) breaks with 1.7.1

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Looks like something changed in 1.7.1 (worked well in 1.7.0): Exception in thread "main" java.lang.NoClassDefFoundError: org/openrdf/rio/RDFHandler looks like one of the dependencies is not included anymore in 1.7.1?

bjonnh

This is one part of #629, building on #633. If we can generate HTML lists, then it shouldn't be much harder to generate Markdown lists.

jamesaoverton

This is one part of #629, building on #631 and #638. I have some use cases where I'd like RDFa strings inside JSON -- mainly for Manchester expressions that I...

jamesaoverton

This is one part of #629. I'd like HTML+RDFa for tables and lists (#633). This will require a new ManchesterOWLSyntaxObjectRDFaRenderer class. - [RDFa Primer](https://www.w3.org/TR/rdfa-primer/) - [RDFa Playground](http://rdfa.info/play/) Here's a first...

jamesaoverton

Exports in multiple formats and flavours

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Exporting to TSV is top priority #459. This issue is for a shopping list of features we can add later. But I'm writing it now so we can design `export`...

jamesaoverton

Documentation: Add example of how to generate template with role id.

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I am trying to run this template: ``` ID Measurement definition ID EC EFO:0001444 and (RO:0002314 some %) EFO:0004515 UBERON:0001015 ``` using a query that does not involve an external...

matentzn