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ROBOT is an OBO Tool
After frustration with #826, I did some research. Java 15 comes with a (new?) tool called [`jpackage`](https://docs.oracle.com/en/java/javase/15/jpackage/packaging-overview.html) which claims to support: - Linux: deb, rpm - macOS: pkg, app in...
I was helping a colleague install ROBOT on a Mac yesterday. He didn't have Java installed. Following the install instructions from the Java install link took us to Oracle's Java...
Test: ``` git clone https://github.com/monarch-ebi-dev/robot_tests.git cd robot_tests make tests ``` Test is called `fail-external-1`. As you can see, this will extract many internal axioms, such as: ``` ObjectPropertyRange( ) ```
the duplicate_label_synonym check will fail to find this: ``` AnnotationAssertion(rdfs:label "thermokarst"@en) AnnotationAssertion( "thermokarst") ``` This is because the values are not identical. We should normalize values to strings first. Note...
Resolves [#748] - [ ] `docs/` have been added/updated - [ ] tests have been added/updated - [ ] `mvn verify` says all tests pass - [ ] `mvn site`...
Many people like to browse ontologies as TSVs in excel etc, or to do programmatic operations over tabular serializations (RDBMSs, Pandas, R data frames, perl hacks, unix grep/sort etc). It's...
We're starting to find bugs when running Maven under different versions of Java. The simplest fix for most of these problems is just to update the plugins to the latest...
Building on the list of projects in #359, it would be very helpful to test ROBOT against a diverse set of ontology projects. We should be able to test a...
With the root logger set to INFO When run any command from robot-command, the root logger after that command is set to ERROR. I'm trying to dig into where this...
This command will analyze all logical axioms in an ontology. So far only a single analysis is performed, testing the power of each axiom. See below for how this is...