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ROBOT is an OBO Tool
Resolves #1026. - [ ] `docs/` have been added/updated - [x] tests have been added/updated - [x] `mvn verify` says all tests pass - [x] `mvn site` says all JavaDocs...
Hello, Could somebody please explain the following to me? The format for these template files is clear as mud. I merely want to create an owl file from the following...
Hello, I am using Protege 5.5. In order to load the lists of terms I have I am using ROBOT to convert CSV/TSV files into OWL files. This works well...
Catalog file does not seem to be used for `--input-iri` (tested on `query` command). Based on the documentation I am not completely sure if it is a bug, or intended...
Currently, many ROBOT commands can be either run separately (and producing intermediate results), or chained in a single command (thus saving some space/time to (de)serialize the inputs/outputs). As an example,...
This could give us a simple way to remove certain axiom annotations while preserving others.
For some reason when I do a diff of two OWL files created from NCBITaxon, the labels appear to be replaced by IDs when the newer ontology is set as...
I've tried every way I can think of to export rdfs:domain and rdfs:range properties using export function. None of them ever produce any exported info for the properties. using "rdfs:domain"...
Having the `input.owl`: ``` ``` a mapping file `mappings.csv`: ``` Old IRI,New IRI http://purl.obolibrary.org/obo/IAO_0000412,http://www.geneontology.org/formats/oboInOwl#hasExactSynonym ``` and running `java -jar robot.jar rename --input input.owl --output output.owl --mappings mappings.csv` ends up with...
The command `robot explain -vvv -i input.owl --reasoner ELK -M unsatisfiability --unsatisfiable all --explanation explanations.md` ends-up with the following exception (I will try to pinpoint some MWE ontology to provide...