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ROBOT is an OBO Tool
Good morning! Thanks so much for providing Robot - it's a really useful resource. I've been making use of the `diff` command, and was wondering about the possibility of two...
It would be great if it were possible to install robot with homebrew (https://brew.sh/) with a command like `brew install robot`. This would greatly simplify the need to putz around...
I am developing a new command for a few use cases that allows migrating terms easily from one IDSPACE to another, preserving provenance and the likes. Use cases include: 1)...
The OBO versioning principles: http://www.obofoundry.org/principles/fp-004-versioning.html Recommend that ontologies publish owl:versionInfo alongside our version IRIs. We should add a simple report check for that; its super quick, so I don't have...
There are a few standard problems we have (especially when merging ontologies): 1. Having the same axiom multiple times with different sets of axiom annotations 2. Having whitespace at the...
When we combine ontologies, we copy definitions and add provenance. For example, we re-use the definition of HP:0032154 in MONDO:0005318: ``` [Term] id: HP:0032154 name: Aphthous ulcer def: "Oral aphthous...
1. Currently, if the value of a property changes, there are two lines shown and they are in different sections - one a "-" and later one a "+". It...
Resolves [#ISSUE, resolves #ISSUE] - [x] `docs/` have been added/updated - [ ] tests have been added/updated - [ ] `mvn verify` says all tests pass - [ ] `mvn...
Hello Robot Dev team, I've encountered the following `ArrayIndexOutOfBoundsException` error while using ROBOT template. I've simplified the template and command causing the issue down the to following template tsv file:...
The OWLAPI will sometimes silently turn RDF into http://org.semanticweb.owlapi/error#Error1, Error2, etc nodes if it can't handle it. There may be some strict mode in the owlapi that we can expose...
