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How to delete a deprecated axiom?

13

For now, I am able to remove deprecated entities if annotated by owl:deprecated true using the following command: robot remove --select "owl:deprecated='true'^^xsd:boolean" However, if I deprecate not a class, but...

psiotwo

Resolves [#886] - [ ] `docs/` have been added/updated - [ ] tests have been added/updated - [ ] `mvn verify` says all tests pass - [ ] `mvn site`...

hkir-dev

robot extract/merge should optionally inject provenance

15

Resolves [#893 , resolves #893] - [x] `docs/` have been added/updated - [x] tests have been added/updated - [x] `mvn verify` says all tests pass - [x] `mvn site` says...

hkir-dev

Report command fails for some textual content when the output format is JSON

2

Having input.owl: ``` skos:Concept interferes with "quoted text" ``` and running `java -jar robot.jar report --input input.owl --output output.json` ends up with ```Violations: 5 ----------------- ERROR: 4 WARN: 0 INFO:...

psiotwo

Reduce operation with property chains

1

For the [given ontology](https://github.com/ontodev/robot/files/8942924/test_reduce.zip): ```owl Prefix(:=) Prefix(owl:=) Prefix(rdf:=) Prefix(xml:=) Prefix(xsd:=) Prefix(rdfs:=) Ontology( Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) ############################ # Classes ############################ # Class: () SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( ))...

hkir-dev

new extract command method: subset

6

Resolves [#497, resolves #497] - [ ] `docs/` have been added/updated - [ ] tests have been added/updated - [ ] `mvn verify` says all tests pass - [ ]...

hkir-dev

See https://github.com/OBOFoundry/OBO-Dashboard/issues/79

matentzn

Optional.get() cannot be called on an absent value

7

I tried to convert WikiPathways OWL/RDF format to OBO with: ``` java -jar ~/robot.jar convert --input wikipathways/wp/Human/WP12.ttl --output WP12.obo -vvv ``` And got this error: ``` Optional.get() cannot be called...

arteymix

Updating to OWLAPI 4.5.22

2

Resolves [owlapi#1004](https://github.com/owlcs/owlapi/issues/1004) - [ ] `docs/` have been added/updated - [ ] tests have been added/updated - [ ] `mvn verify` says all tests pass - [ ] `mvn site`...

hkir-dev

Add option to relax to recursively relax

3

Example: ``` Prefix: : Ontology: ObjectProperty: hasPart ObjectProperty: inheresIn Class: P1 EquivalentTo: hasPart some (Q and inheresIn some E) Class: P2 EquivalentTo: Foo and (hasPart some (Q and inheresIn some...

cmungall