Nicolas Vannieuwkerke
Nicolas Vannieuwkerke
@jfy133 is this okay for you?
Don't worry about it ;)
`nf-validation` adds validation support for following keys as an extension on top of `draft 2020-12`: - `exists` => Boolean: checks if a file/directory exists (`true`) or does not exist (`false`)...
You should also remove the pytest files of `delly/call` and remove the module from `pytest_modules.yml` so the pytest tests don't run
You could check parts of the VCF content with `path(process.out.[0][1].linesGzip[-5..-1])` (This will snapshot the last 5 lines of the VCF). For the index you can simple snapshot the filename like...
> The use of file and path in the test assertions is a bit confusing to me (`file` -> Nextflow, `path` -> Groovy?). I hope you actually meant `path(process.out.[0][1]).linesGzip[-5..-1]` or...
Yeah my bad sorry, I forgot this PR did mostly the same changes. I'll fix the conflicts
Okay conflicts fixed but here are some pointers: 1. The tests are still using the old `params.test_data` way of getting the test files, this should be updated to use `params.modules_testdata_base_path`...