Nicolas Vannieuwkerke

I can't get the versions of `pre.py` and `hap.py`: ``` $ hap.py --version Hap.py ``` and ``` $ pre.py --version usage: VCF preprocessor [-h] [--location LOCATIONS] [--pass-only] [--filters-only FILTERS_ONLY] [-R...

Update bclconvert: show undetermined barcodes for multiple runs

3

- [x] Removed the check for the undetermined barcodes plot so the barcodes are also generated when there are multiple runs - [x] `CHANGELOG.md` has been updated - [x] There...

### Is there an existing module for this? - [X] I have searched for the existing module ### Is there an open PR for this? - [X] I have searched...

### Is there an existing module for this? - [X] I have searched for the existing module ### Is there an open PR for this? - [X] I have searched...

Prototype `nf-test`

1

Currently contains: - A prototype of a simple process (rtgtools/pedfilter) => uses the process testing - A prototype of a module that depends on other modules for its input data...

https://github.com/askimed/nf-test

Issue for VCF conversion when two translocations start from the same position

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Hi, I have a VCF that contains two translocations that start at the same position in the genome. This causes some issues when trying to convert the TSV to VCF...

AnnotSV doesn't add the sample IDs causing variantconvert to fail

19

Hi, I've encountered a variantconvert error when running with the `-vcf 1` option. Which looks like this: ``` python3 /usr/local/share/python3/variantconvert//variantconvert convert -i 20230526_AnnotSV/PosCon2.annotsv.tsv -o 20230526_AnnotSV/PosCon2.ann.vcf.tsv -fi annotsv -fo vcf -c...

Hi, thanks for this wonderful tool! I'm wondering whether or not it is planned to add support for VCFv4.2 breakend notation as specified [here](https://samtools.github.io/hts-specs/VCFv4.2.pdf#subsection.5.4)? Currently the tool exits with the...