Nicolas Vannieuwkerke

icon company Center for Medical Genetics Ghent icon location Ghent, Belgium icon location Bioinformatician at CMGG | nf-core core member | nf-core maintainer | Nextflow ambassador

Results 128 comments of Nicolas Vannieuwkerke

Finalize workflow output definition

Any news on when the dynamic path mapping will be in a nextflow edge release? I'm currently trying to convert my file publishing to the new output definitions but need...

Finalize workflow output definition

I personally like option 1 because that way I don't have to make sure the files emitted by processes have the correct name as I will set the correct output...

Finalize workflow output definition

During my testing I also noticed a weird error. So when an input file that hasn't been staged is present in the channel specified in the `publish` section, the next...

Update container image to include RTGtools

Is vcfeval still not working with the seqera container?

Class cannot be created (missing no-arg constructor): nextflow.file.http.XPath

@atrigila do you remember what the issue was here?

Class cannot be created (missing no-arg constructor): nextflow.file.http.XPath

Thank you for fixing this!

Json schema improvements

@subwaystation would you also take a look at this? I just want to make I've not done any weird stuff :grin:

Json schema improvements

No worries, there's no rush :)

Json schema improvements

@heuermh is this something you are interested in?

AnnotSV BioConda Environment: Reference Issues For GRCh38

Have you tried installing `annotsv` in a fresh conda environment?