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Added delly/filter, changed delly/call - this time with up-to-date fork

Open alexnater opened this issue 1 year ago • 10 comments

PR checklist

Closes https://github.com/nf-core/modules/issues/4808

  • [X] This comment contains a description of changes (with reason).
  • Added module delly/filter
  • Changed module delly/call to allow somatic SV calling
  • Changed testing to nf-test for delly/call
  • [X] If you've added a new tool - have you followed the module conventions in the contribution docs
  • [ ] If necessary, include test data in your PR.
  • [X] Remove all TODO statements.
  • [X] Emit the versions.yml file.
  • [X] Follow the naming conventions.
  • [X] Follow the parameters requirements.
  • [X] Follow the input/output options guidelines.
  • [X] Add a resource label
  • [X] Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • [ ] nf-core modules test <MODULE> --profile docker
      • [X] nf-core modules test <MODULE> --profile singularity
      • [X] nf-core modules test <MODULE> --profile conda

alexnater avatar Mar 25 '24 09:03 alexnater