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Added delly/filter, changed delly/call - this time with up-to-date fork
PR checklist
Closes https://github.com/nf-core/modules/issues/4808
- [X] This comment contains a description of changes (with reason).
- Added module delly/filter
- Changed module delly/call to allow somatic SV calling
- Changed testing to nf-test for delly/call
- [X] If you've added a new tool - have you followed the module conventions in the contribution docs
- [ ] If necessary, include test data in your PR.
- [X] Remove all TODO statements.
- [X] Emit the
versions.ymlfile. - [X] Follow the naming conventions.
- [X] Follow the parameters requirements.
- [X] Follow the input/output options guidelines.
- [X] Add a resource
label - [X] Use BioConda and BioContainers if possible to fulfil software requirements.
- Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
- For modules:
- [ ]
nf-core modules test <MODULE> --profile docker - [X]
nf-core modules test <MODULE> --profile singularity - [X]
nf-core modules test <MODULE> --profile conda
- [ ]
- For modules: