Nicolas Vannieuwkerke

icon company Center for Medical Genetics Ghent icon location Ghent, Belgium icon location Bioinformatician at CMGG | nf-core core member | nf-core maintainer | Nextflow ambassador

Results 30 comments of Nicolas Vannieuwkerke

change --reload-extra-file option to get multiple files at once

Any updates on this?

Add Eigenstratdatabasetools/snpcoverage

Hi, you have to upload some test data for GitHub Actions to use as the test samples. You can do this on https://github.com/nf-core/test-datasets/tree/modules on the branch `modules`. You can then...

Add Eigenstratdatabasetools/snpcoverage

> > Hi, you have to upload some test data for GitHub Actions to use as the test samples. You can do this on https://github.com/nf-core/test-datasets/tree/modules on the branch `modules`. You...

humann3

You can also see there are some trailing whitespaces detected by the `Code Linting / EditorConfig` check. These should be removed too :)

Update bclconvert: show undetermined barcodes for multiple runs

ping @matthdsm

Update bclconvert: show undetermined barcodes for multiple runs

Fixes #1709

Cardinality of MALT_BUILD

Can you remove the md5sums of the empty files from `test.yml`? @chriswyatt1

Cardinality of MALT_BUILD

Tests are failing :fearful:

Updating the modules.json file to new format results in branch lookup error

Hi, I got the same error on my pipeline. I updated the template and did a manual merge with a development branch. I got a lot of merge conflicts and...

Add starting deseq2 differential module

Did you use the `nf-core modules create` tool to create this module? The test files are absent in this PR (which is why some of the actions aren't running)