Nick Tustison
Nick Tustison
Related a bit---@grahamlittlephd, are you interested in segmenting the amygdala and hippocampus? If so, I can point you to functionality in our deep learning library which does this.
> However, this still doesn't explain why the behavior of Atropos changed from 2.5.1 to 2.5.2. It shouldn't have worked. I don't know exactly why it did. I have my...
Thanks for checking @cookpa. Is there anything outstanding for this issue or can we close it?
Thanks for all this. I haven't had time to look but will do so asap. Re. the normalization---how much have you coordinated with the template building scrips in the core...
If you haven't coordinated with the original scripts, I'd be inclined to recommend that you implement any normalization locally for your purposes. However, I think the modification of deleting the...
Was this @ncullen93 who put this together? If so, hopefully he can weigh in.
I think you'd have to add your own. We haven't built out the ANTsR/ANTsPy external data sources like we have with ANTsXNet.
The various programs in the toolkit are agnostic to acquisition direction. Assuming standard protocols, real-world orientation is stored in the header and the registration program uses that information for optimizing...
This issue has been around since initial development. I remember looking into it a couple times and not finding an easy solution, although maybe I'm wrong. But the actual cost...
Closing this for now.