Nick Tustison
Nick Tustison
Hey @ahoopes , @gdevenyi and others here are a great resource but you might also might want to start a parallel conversation over at the ITK discourse forum. There are...
Perhaps the same issue. Make sure to test using single threaded and see if you can determine any patterns in the discrepancy. I don't have those same platforms and I'm...
``` import os os.environ["ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS"] = "1" ``` In the future, please post ANTsPy-specific questions on the ANTsPy repository.
What happens when you try with ``antsMultivariateTemplateConstruction.sh``?
An important option would be the prior weight, ``-w``. Also, increasing the number of Atropos iterations might iterate away from the ideal solution.
Increase---it refers to the prior probability images and, in the absence of contrast, you want to emphasize the spatial priors while de-emphasizing the actual data.
Awesome. Let me know if you need me to take a look.
It is assumed that, prior to template building, the multi-modal images for each subject are already aligned. Therefore, you would only have one set of transform files per subject.
Perhaps you're misunderstanding what I originally wrote but the requirement of intra-subject image alignment prior to template building will mean that the T1 and T2 images reside in the same...