Nick Tustison

You have to save the files somewhere and there's an option in ``ants.registration`` which allows you to specify the location.

Outputprefix includes path information

Although it performs well, ``antsBrainExtraction.sh`` is build on relatively simplistic priors and so one might find themselves frequently having to adjust input parameters (e.g., template). Have you looked at the...

The first example uses a 2-D image (super-resolution is 3-D) and the second example, as stated in the README, is deprecated. Try using the second image in the first example.

I just ran it and didn't have any problem (see below). You might want to clean out your ANTsXNet cache (~/.keras/ANTsXNet) to make sure you have the correct model. ```...

I can't reproduce this error so there's not much I can suggest. However, I would recommend looking at the error that's being thrown in [``mri_super_resolution.py``](https://github.com/ANTsX/ANTsPyNet/blob/master/antspynet/utilities/mri_super_resolution.py#L45). It's simply loading the model...

> Now that this module is working for me, I do have some follow up questions, although these are not really issues in running the model, but more of the...

I actually worked on this problem for quite awhile with a collaborator. Unfortunately, collaborator interest waned and the project never went anywhere. However, I played around enough with the data...

Thanks @ahoopes . Just to be clear, you haven't tested this on other platforms such as MacOS, correct?

Yeah, that would be helpful. If you print the output to the screen, how do the convergence numbers compare?