Nathan Sheffield

actually I really like this idea...and I think we should make this standard for all the pipelines. Did you ever finish this concept? This is somewhat related to a new...

You should try [pepatac](https://github.com/databio/pepatac) -- I don't know that anyone is updating this ATAC-seq pipeline anymore... @afrendeiro ?

oh cool. any interest in combining with pepatac?

Probably not.

This commit only added a slash to the template, it did not address the actual problem described in the original post.

Yes. I think you are right that this is outside the scope of geofetch, at the moment. The first goal needs to be just to get the data *as it...

actually, we should use class methods, like `Project.from_pandas` and `Project.from_pephub`, etc.

@donaldcampbelljr I think this may also be needed for your work using peppy's `import` to implement the looper config embedded pep.

I **really** want to be able to do something like this: ``` import peppy prj = peppy.Project.from_pephub("nsheff/mypep:default") ```

Is there some way of getting the sample's index (whether it be from `sample_name` or some custom attribute) from a peppy sample object?